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Categories: Biology: General, Geoscience: Earthquakes
Published New method to help with analysis of single cell data



CITE-seq (cellular indexing of transcriptomes and epitopes) is an RNA sequencing-based method that simultaneously quantifies cell surface protein and transcriptomic data within a single cell readout. The ability to study cells concurrently offers unprecedented insights into new cell types, disease states or other conditions. While CITE-seq solves the problem of detecting a limited number of proteins while using single-cell sequencing in an unbiased way, one of its limitations is the high levels of background noise that can hinder analysis.
Published Heat tolerant coral may trade fast growth for resilience



Algae living within the soft tissue of coral supply much of the energy needed by their hosts, and some symbiotic algae help coral withstand warmer water better than others. Researchers have now found that there was a tradeoff for corals dominated by the thermally sensitive algae -- they have higher growth, but only in cooler water.
Published Nature photographers posting to social media help with protecting biodiversity



Nature photographers posting to social media are helping improve biodiversity conservation mapping in South Asia, and the method could go global.
Published Rediscovery of rare marine amoeba Rhabdamoeba marina



Researchers have rediscovered and successfully cultivating Rhabdamoeba marina -- a rare marine amoeba that has only been reported in two cases in the past century. Using this culture strain, they performed a comprehensive analysis of its genetic sequence, revealing for the first time the phylogenetic position of this enigmatic amoeba, and proposed a novel taxonomic classification based on their research findings.
Published Study proposes new framework to identify keystone microbial species



Microbial communities are thought to contain keystone species, which can disproportionately affect the stability of the communities, even if only present in low abundances. Identifying these keystone species can be challenging, especially in the human gut, since it is not feasible to isolate them through systematic elimination. Researchers have designed a new data-driven keystone species identification (DKI) framework that uses machine learning to resolve this difficulty.
Published Genomic tug of war could boost cancer therapy



Researchers have discovered a 'genomic tug of war' in animal studies that could influence how well certain patients -- or certain cancers -- respond to decitabine, a drug used to treat myelodysplastic syndromes that is plagued by drug resistance issues. For the first time, researchers show that decitabine causes coding and non-coding regions of DNA to engage in a tug of war for a gene activator, called H2A.Z. Typically, deticabine draws this gene activator away from coding DNA, causing gene expression to grind to a halt and cells to die. However, many types of cancer have very high levels of H2A.Z, which may help them overcome this decitabine-induced tug of war, allowing the cancer to grow.
Published How cell identity is preserved when cells divide



A new theoretical model helps explain how epigenetic memories, encoded in chemical modifications of chromatin, are passed from generation to generation. Within each cell's nucleus, researchers suggest, the 3D folding patterns of its genome determines which parts of the genome will be marked by these chemical modifications.
Published Much more than waste: Tiny vesicles exchange genetic information between cells in the sea



Researchers take a look at data that has so far been mostly discarded as contamination, revealing the previously underestimated role of extracellular vesicles (EVs). These are important for the exchange of genetic information between cells and thus for the microbial community in the sea.
Published New study reveals that bees cannot taste even lethal levels of pesticides



New research has revealed that bumblebees cannot taste pesticides present in nectar, even at lethal concentrations. This means bumblebees are not able to avoid contaminated nectar, putting them at high risk of pesticide exposure and posing a threat to crop pollination.
Published Bear genes show circadian rhythms even during hibernation



The internal clocks of grizzly bears appear to keep ticking through hibernation, according to a genetic study. This persistence highlights the strong role of circadian rhythms in the metabolism of many organisms including humans. The genetic study confirmed observational evidence that bears' energy production still waxes and wanes in a daily pattern even as they slumber for several months without eating. The researchers also found that during hibernation the amplitude of the energy production was blunted, meaning the range of highs and lows was reduced. The peak also occurred later in the day under hibernation than during the active season, but the daily fluctuation was still there.
Published New study reveals huge potential for future waves of invasive species



Human trade and transport have led to the intentional and accidental introductions of non-native species outside of their natural range globally. These biological invasions can cause extinctions, cost trillions, and spread diseases. A study has investigated how many of these non-native species already exist worldwide and which species groups are particularly prone to become non-native.
Published Hormones have the potential to treat liver fibrosis



Researchers have discovered previously unknown changes in a specific type of liver cells, potentially opening avenues for a new treatment for liver fibrosis, a potentially life-threatening condition. Currently, there are no drugs available to treat liver fibrosis.
Published More than meows: How bacteria help cats communicate



Many mammals, from domestic cats and dogs to giant pandas, use scent to communicate with each other. A new study shows how domestic cats send signals to each other using odors derived from families of bacteria living in their anal glands.
Published Forget social distancing: House finches become more social when sick



Social distancing when sick has become second nature to many of us in the past few years, but some sick animals appear to take a different approach. A new study of house finches uncovered a surprising result. Unlike other social animals who passively or actively isolate themselves when sick, this gregarious backyard bird species gravitates toward healthy flock mates when they are sick, even more so than healthy birds do.
Published Plants that survived dinosaur extinction pulled nitrogen from air



Ancient cycad lineages that survived the extinction of the dinosaurs may have done so by relying on symbiotic bacteria in their roots to fix atmospheric nitrogen. The finding came from an effort to understand ancient atmospheres, but became an insight into plant evolution instead.
Published How bacteria recognize viral invasion and activate immune defenses



Bacteria have an array of strategies to counter viral invasion, but how they first spot a stranger in their midst has long been a mystery.
Published Multiple evolutionary trajectories in aquatic crocodiles



In the geological past, several groups of crocodiles evolved towards a morphology adapted to marine life. However, the extent of these adaptations and their evolutionary trajectories remained unknown. An exhaustive study of their morphology has now shed light on the evolutionary mechanisms at work, thanks to three-dimensional reconstructions.
Published Pseudoscorpions of Israel: Two new family records discovered



A recent study has unveiled two previously undiscovered families of Pseudoscorpions in Israel. Positioned at the convergence of three continents, Israel's distinct biodiversity has undergone systematic revision, resulting in an updated checklist featuring 61 pseudoscorpion species across 28 genera and fourteen families. This pioneering research includes the introduction of the first illustrated identification key, based on morphological characters, accompanied by distribution maps. Notably, the study highlights the discovery of two new family records in Israel -- Syarinidae and Cheiridiidae -- both with a cosmopolitan distribution, including in the Mediterranean region. The findings significantly enhance our comprehension of regional biodiversity, offering crucial resources for forthcoming ecological, taxonomical and conservation endeavors. Furthermore, several undescribed species identified in this paper will be comprehensively described in separate publications, further advancing the field of pseudoscorpion taxonomy.
Published New scientific study reveals the crucial role of herbivorous fishes and sea urchins in restoring Caribbean coral reefs



A new study presents crucial findings on the feeding preferences of herbivorous fishes and the sea urchin Diadema antillarum in Little Cayman. The study sheds new light on the dynamics of these herbivores and their impact on the resilience of Caribbean coral reefs.
Published Surveilling wetlands for infectious bird flu -- and finding it



Recently, morning omelets and holiday dinners have gotten more expensive. One likely cause is bird flu, outbreaks of which led to the deaths of millions of chickens and turkeys from infection or culling in 2022, according to the U.S. Department of Agriculture, and which still demands rigorous monitoring of wild populations. Now, researchers have developed a method that detected infectious bird flu virus in wetlands frequented by waterfowl.