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Categories: Biology: Developmental, Ecology: General
Published Machine learning method reveals chromosome locations in individual cell nucleus



Researchers have made a significant advancement toward understanding how the human genome is organized inside a single cell. This knowledge is crucial for analyzing how DNA structure influences gene expression and disease processes.
Published Different means to the same end: How a worm protects its chromosomes



Researchers have discovered that a worm commonly used in the study of biology uses a set of proteins unlike those seen in other studied organisms to protect the ends of its DNA.
Published Scientists grow 'mini kidneys,' revealing new insights into metabolic defects and potential therapy for polycystic kidney disease



Scientists have successfully grown 'mini kidneys' in the lab and grafted them into live mice, revealing new insights into the metabolic defects and a potential therapy for polycystic kidney disease.
Published Toothed whale echolocation organs evolved from jaw muscles



Genetic analysis finds evidence suggesting that acoustic fat bodies in the heads of toothed whales were once the muscles and bone marrow of the jaw.
Published Common loons threatened by declining water clarity



The Common Loon, an icon of the northern wilderness, is under threat from climate change due to reduced water clarity, according to a new study. The study followed up an earlier paper that showed substantial reproductive decline in the author's study area in northern Wisconsin.
Published Can language models read the genome? This one decoded mRNA to make better vaccines



Researchers developed a foundational language model to decode mRNA sequences and optimize those sequences for vaccine development. The tool shows broader promise as a means for studying molecular biology.
Published eDNA methods give a real-time look at coral reef health



The study underscores the crucial role of microbes in maintaining coral reef health, akin to the human gut microbiome. Hurricanes and disease outbreaks affect coral reef water microbial communities, leading to changes that may support further reef decline. Microbial analysis enables prompt assessment of disturbances' impacts on coral reefs, facilitating timely interventions to support reef ecosystems. Environmental DNA (eDNA) analysis offers a noninvasive approach to study coral microbial communities and diagnose reef health.
Published Four in five bird species cannot tolerate intense human pressures



In a recent study, researchers found that 78% of the world's bird species do not thrive in the most modified human-dominated environments. These species are also most likely to have declining populations.
Published What four decades of canned salmon reveal about marine food webs



Researchers have shown that levels of anisakid worms -- a common marine parasite -- rose in two salmon species in the Gulf of Alaska and Bristol Bay over a 42-year period. The team discovered this by studying salmon caught, killed and canned from 1979 to 2021. Since anisakid worms have a complex life cycle involving multiple types of hosts, the researchers interpret their rising numbers as a potential sign of ecosystem recovery, possibly driven by rising numbers of marine mammals thanks to the 1972 Marine Mammal Protection Act.
Published New tools reveal how genes work and cells organize



Researchers have discovered how certain proteins can attach to special structures in RNA, called G-quadruplexes. Additionally, they have developed computational tools capable of predicting these protein-RNA interactions. The newfound ability to predict these interactions can help future work in understanding molecular pathways in the cell and pave the way for developing drugs targeting these RNA G-quadruplex binding proteins, that are found to be involved in disease such as cancer.
Published Groundbreaking research in groundwater's role in ecosystem sustainability



Until now, groundwater -- a critical water resource around the globe, especially in dry regions -- has been largely unstudied in its importance and role in sustaining ecosystems. New groundbreaking research examines the relationship between groundwater and ecosystems across California.
Published Older trees help to protect an endangered species



The oldest trees in the forest help to prevent the disappearance of endangered species in the natural environment, according to a new study. This is the case of the wolf lichen -- threatened throughout Europe --, which now finds refuge in the oldest trees in the high mountains of the Pyrenees. This study reveals for the first time the decisive role of the oldest trees in the conservation of other living beings thanks to their characteristic and unique physiology.
Published We've had bird evolution all wrong



Genomic anamolies dating back to the time of the dinosaurs misled scientists about the evolutionary history of birds.
Published Melting glaciers in a warmer climate provide new ground for invasive species



In 2022 and 2023, biologists from research institutes in the UK and the Falkland Islands led two expeditions to South Georgia to study the impacts of invasive species on this cold and rugged sub-Antarctic island. They report that several invasive plants and invertebrates rapidly colonized the new ground exposed by melting glaciers, leaving few pristine areas for native species. With ongoing climate change, more research is needed across the world to understand how invasive species impact the fragile ecosystems that develop after glacier melting.
Published When inequality is more than 'skin-deep': Social status leaves traces in the epigenome of spotted hyenas in Tanzania



A research consortium provides evidence that social behavior and social status are reflected at the molecular level of gene activation (epigenome) in juvenile and adult free-ranging spotted hyenas. They analyzed non-invasively collected gut epithelium samples from both high-ranking and low-ranking female hyenas and showed that rank differences were associated with epigenetic signatures of social inequality, i.e., the pattern of activation or switching off of genes that regulate important physiological processes such as energy conversion and immune response in several genome regions.
Published New approach to monitoring freshwater quality can identify sources of pollution, and predict their effects



Analysing the diversity of organic compounds dissolved in freshwater provides a reliable measure of ecosystem health, say scientists.
Published Cell division quality control 'stopwatch' uncovered



Biologists have uncovered a quality control timing mechanism tied to cell division. The 'stopwatch' function keeps track of mitosis and acts as a protective measure when the process takes too long, preventing the formation of cancerous cells.
Published Connecting the dots to shape growth forces



Branching patterns are prevalent in our natural environment and the human body, such as in the lungs and kidneys. For example, specific genes that express growth factor proteins are known to influence the development of the lungs' complex branches. Researchers have unveiled a regulatory system linking signal, force, and shape in mouse lung structure development. The team recognized that the signal protein ERK plays an active role in causing growing lung tissue to curve.
Published Old immune systems revitalized in mouse study, improving vaccine response



Those with aging immune systems struggle to fight off novel viruses and respond weakly to vaccination. Researchers were able to revitalize the immune system in mice.
Published Researchers find energy development and tree encroachment impact Wyoming pronghorn



While Wyoming is home to some of North America's most abundant populations of pronghorn that have largely been stable in recent years, a new analysis shows that many herds are experiencing long-term declines in fawn production.