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Categories: Biology: Genetics, Mathematics: Modeling

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Biology: Biochemistry Biology: Biotechnology Biology: Cell Biology Biology: Evolutionary Biology: General Biology: Genetics Biology: Microbiology
Published

Persistent strain of cholera defends itself against forces of change, scientists find      (via sciencedaily.com)     Original source 

A longstanding mystery about the strain of Vibrio cholerae (V. cholerae) responsible for the seventh global cholera pandemic is how this lineage has managed to out-compete other pathogenic variants. The team identified a unique quirk of the immune system that protects the bacteria from a key driver of bacterial evolution.

Biology: Biochemistry Biology: Biotechnology Biology: Cell Biology Biology: Evolutionary Biology: General Biology: Genetics Biology: Molecular
Published

Insights into protein evolution      (via sciencedaily.com)     Original source 

A research team has unveiled a breakthrough in understanding how specific genetic sequences, known as pseudogenes, evolve.

Biology: Biochemistry Biology: Cell Biology Biology: General Biology: Genetics Biology: Microbiology Biology: Molecular Biology: Zoology Offbeat: General Offbeat: Plants and Animals
Published

Fruit fly testes offer potential tool against harmful insects      (via sciencedaily.com)     Original source 

A way to curb nagging insects has been flying under our radar -- an enzyme from fruit fly testes. The compound could control bugs that carry disease and harm crops by stunting their ability to procreate, researchers have found.

Chemistry: Biochemistry Chemistry: Thermodynamics Computer Science: General Mathematics: Modeling Mathematics: Statistics Physics: General
Published

New work extends the thermodynamic theory of computation      (via sciencedaily.com)     Original source 

Physicists and computer scientists have recently expanded the modern theory of the thermodynamics of computation. By combining approaches from statistical physics and computer science, the researchers introduce mathematical equations that reveal the minimum and maximum predicted energy cost of computational processes that depend on randomness, which is a powerful tool in modern computers.

Biology: Biochemistry Biology: Biotechnology Biology: Cell Biology Biology: General Biology: Genetics Biology: Microbiology Biology: Zoology Ecology: Animals
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New viruses that could cause epidemics on the horizon      (via sciencedaily.com)     Original source 

Suddenly they appear and -- like the SARS-CoV-2 coronavirus -- can trigger major epidemics: Viruses that nobody had on their radar. They are not really new, but they have changed genetically. In particular, the exchange of genetic material between different virus species can lead to the sudden emergence of threatening pathogens with significantly altered characteristics.

Biology: Biochemistry Biology: Biotechnology Biology: Botany Biology: Cell Biology Biology: Developmental Biology: Evolutionary Biology: General Biology: Genetics Biology: Molecular Ecology: Endangered Species Offbeat: Plants and Animals
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Like dad and like mum ... all in one plant      (via sciencedaily.com)     Original source 

Scientists have established a system to generate clonal sex cells in tomato plants and used them to design the genomes of offspring. The fertilization of a clonal egg from one parent by a clonal sperm from another parent led to plants containing the complete genetic information of both parents.

Biology: Biochemistry Biology: Cell Biology Biology: Developmental Biology: General Biology: Genetics Biology: Molecular
Published

Research on centromere structure yields new insights into the mechanisms of chromosome segregation errors      (via sciencedaily.com)     Original source 

Researchers have made a surprising new discovery in the structure of the centromere, a structure that is involved in ensuring that chromosomes are segregated properly when a cell divides. Mistakes in chromosome segregation can lead to cell death and cancer development. The researchers discovered that the centromere consists of two subdomains. This fundamental finding has important implications for the process of chromosome segregation and provides new mechanisms underlying erroneous divisions in cancer cells. The research was published in Cell on May 13th 2024.

Biology: Biochemistry Biology: Biotechnology Biology: Cell Biology Biology: Evolutionary Biology: General Biology: Genetics Biology: Marine Biology: Microbiology Biology: Molecular Ecology: Sea Life Environmental: Water
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How do genetically identical water fleas develop into male or female?      (via sciencedaily.com)     Original source 

Researchers have used a novel combination of short-read and long-read RNA sequencing to identify the different isoforms of genes expressed in the crustacean Daphnia magna. Males and females are genetically identical, but using this technique the team revealed genes that switch the predominant isoform in a male-female-dependent manner. This study may help further advance technologies in crustacean aquaculture.

Biology: Biochemistry Biology: Biotechnology Biology: Cell Biology Biology: General Biology: Genetics Biology: Molecular
Published

Research shows that 'softer' proteins can cross into the nucleus quicker      (via sciencedaily.com)     Original source 

Researchers have discovered that how soft or rigid proteins are in certain regions can dictate how fast or slow they enter the nucleus.

Biology: Biochemistry Biology: Biotechnology Biology: Cell Biology Biology: Developmental Biology: Evolutionary Biology: General Biology: Genetics Biology: Microbiology Biology: Molecular
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Cellular activity hints that recycling is in our DNA      (via sciencedaily.com)     Original source 

Introns are perhaps one of our genome's biggest mysteries. They are DNA sequences that interrupt the sensible protein-coding information in your genes, and need to be 'spliced out.'

Computer Science: General Mathematics: Modeling Physics: General
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New machine learning algorithm promises advances in computing      (via sciencedaily.com)     Original source 

Systems controlled by next-generation computing algorithms could give rise to better and more efficient machine learning products, a new study suggests.

Biology: Biochemistry Biology: Biotechnology Biology: Cell Biology Biology: Developmental Biology: Evolutionary Biology: General Biology: Genetics Biology: Microbiology Biology: Molecular Biology: Zoology
Published

New sex-determining mechanism in African butterfly discovered      (via sciencedaily.com)     Original source 

In a study of a species of African butterfly, researchers have discovered a previously undescribed molecular mechanism of how the sex of an embryo is initially specified.

Mathematics: Modeling
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AI advancements make the leap into 3D pathology possible      (via sciencedaily.com)     Original source 

Researchers present Tripath: new, deep learning models that can use 3D pathology datasets to make clinical outcome predictions. The research team imaged curated prostate cancer specimens, using two 3D high-resolution imaging techniques. The models were then trained to predict prostate cancer recurrence risk on volumetric human tissue biopsies. By comprehensively capturing 3D morphologies from the entire tissue volume, Tripath performed better than pathologists and outperformed deep learning models that rely on 2D morphology and thin tissue slices.

Biology: Biochemistry Biology: Biotechnology Biology: Cell Biology Biology: Developmental Biology: General Biology: Genetics Biology: Microbiology Chemistry: Biochemistry Chemistry: Organic Chemistry
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An epigenome editing toolkit to dissect the mechanisms of gene regulation      (via sciencedaily.com)     Original source 

A recent study led to the development of a powerful epigenetic editing technology. The system unlocks the ability to precisely program chromatin modifications at any specific position in the genome, to understand their causal role in transcription regulation. This innovative approach will help to investigate the role of chromatin modifications in many biological processes, and to program desired gene activity responses, which may prove useful in disease settings.

Chemistry: General Chemistry: Inorganic Chemistry Mathematics: Modeling
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An AI leap into chemical synthesis      (via sciencedaily.com)     Original source 

Scientists introduce a large language model-based AI system that revolutionizes chemistry by integrating 18 advanced tools for tasks like organic synthesis and drug discovery.

Mathematics: Modeling
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Emergency department packed to the gills? Someday, AI may help      (via sciencedaily.com)     Original source 

Emergency departments nationwide are overcrowded and overtaxed, but a new study suggests artificial intelligence (AI) could one day help prioritize which patients need treatment most urgently.

Biology: Biochemistry Biology: Biotechnology Biology: Cell Biology Biology: Developmental Biology: General Biology: Genetics Biology: Microbiology Biology: Molecular
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Progression of herpesvirus infection remodels mitochondrial organization and metabolism      (via sciencedaily.com)     Original source 

Researchers have found that herpesvirus infection modifies the structure and normal function of the mitochondria in the host cell. The new information will help to understand the interaction between herpesvirus and host cells. Knowledge can be utilized in the development of viral treatments.

Biology: Biochemistry Biology: Biotechnology Biology: Cell Biology Biology: Developmental Biology: General Biology: Genetics Biology: Molecular
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How a 'conductor' makes sense of chaos in early mouse embryos      (via sciencedaily.com)     Original source 

The earliest stages of mammalian embryo development are like an orchestra performance, where everyone must play at the exact right moment and in perfect harmony. New research identifies one of the conductors making sense of the chaos.

Biology: Biochemistry Biology: Biotechnology Biology: Botany Biology: Cell Biology Biology: General Biology: Genetics Biology: Microbiology Biology: Molecular Ecology: Endangered Species
Published

Free-forming organelles help plants adapt to climate change      (via sciencedaily.com)     Original source 

Plants' ability to sense light and temperature, and their ability to adapt to climate change, hinges on free-forming structures in their cells whose function was, until now, a mystery. Researchers have now determined how these structures work on a molecular level, as well as where and how they form.

Mathematics: Modeling
Published

Researchers use foundation models to discover new cancer imaging biomarkers      (via sciencedaily.com)     Original source 

Researchers have harnessed the technology behind foundation models, which power tools like ChatGPT, to discover new cancer imaging biomarkers that could transform how patterns are identified from radiological images. Improved identification of such patterns can greatly impact the early detection and treatment of cancer.