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Categories: Biology: Genetics, Ecology: Extinction
Published We've had bird evolution all wrong



Genomic anamolies dating back to the time of the dinosaurs misled scientists about the evolutionary history of birds.
Published Computational tools fuel reconstruction of new and improved bird family tree



Using cutting-edge computational methods and supercomputing infrastructure, researchers have built the largest and most detailed bird family tree to date -- an intricate chart delineating 93 million years of evolutionary relationships between 363 bird species, representing 92% of all bird families. The updated tree reveals sharp increases in effective population size, substitution rates and relative brain size in early birds in the aftermath of the mass extinction event that wiped out the dinosaurs 66 million years ago. And by closely examining one of the branches of this tree, researchers found that flamingos and doves are more distantly related than previous genome-wide analyses had shown.
Published Canada lynx historic range in US likely wider than previously thought



A broader past could mean a brighter future for Canada lynx in the U.S., according to recent research. The study indicates that lynx might do well in the future in parts of Utah, central Idaho and the Yellowstone National Park region, even considering climate change and the lack of lynx in those areas now. Using a model validated by historic records, researchers first found that in 1900, Canada lynx had more suitable habitat in the U.S. than the few northern corners of the country where they are found currently. The study showed the elusive big cat likely roamed over a larger area in the Pacific Northwest, Rocky Mountains, Great Lakes region and parts of New England.
Published When inequality is more than 'skin-deep': Social status leaves traces in the epigenome of spotted hyenas in Tanzania



A research consortium provides evidence that social behavior and social status are reflected at the molecular level of gene activation (epigenome) in juvenile and adult free-ranging spotted hyenas. They analyzed non-invasively collected gut epithelium samples from both high-ranking and low-ranking female hyenas and showed that rank differences were associated with epigenetic signatures of social inequality, i.e., the pattern of activation or switching off of genes that regulate important physiological processes such as energy conversion and immune response in several genome regions.
Published How the Crimean-Congo hemorrhagic fever virus enters our cells



Researchers have identified how the tick-borne Crimean-Congo haemorrhagic fever virus enters our cells. The results are an important step in the development of drugs against the deadly disease.
Published Genomic research may help explain cancer resistance in Tasmanian devils



Through DNA sequencing of Tasmanian devils and their tumors, researchers have tracked the genomic interactions between the animals and the cancer.
Published Researchers discover key gene for toxic alkaloid in barley



Barley is one of the most important cereal crops on a global scale. Many barley cultivars produce a toxic alkaloid called gramine that affects the suitability of barley as fodder, but also helps to protect barley from pathogens. So far, the potential of manipulating gramine levels has not been harnessed for plant breeding, because the genetic basis of gramine production has been unresolved. Research groups now disclose the complete biosynthetic pathway of gramine and demonstrate how gramine biosynthesis can be introduced into model organisms or removed from barley.
Published Cell division quality control 'stopwatch' uncovered



Biologists have uncovered a quality control timing mechanism tied to cell division. The 'stopwatch' function keeps track of mitosis and acts as a protective measure when the process takes too long, preventing the formation of cancerous cells.
Published Connecting the dots to shape growth forces



Branching patterns are prevalent in our natural environment and the human body, such as in the lungs and kidneys. For example, specific genes that express growth factor proteins are known to influence the development of the lungs' complex branches. Researchers have unveiled a regulatory system linking signal, force, and shape in mouse lung structure development. The team recognized that the signal protein ERK plays an active role in causing growing lung tissue to curve.
Published Going 'back to the future' to forecast the fate of a dead Florida coral reef



How coral populations expand into new areas and sustain themselves over time is limited by the scope of modern observations. Going back thousands of years, a study provides geological insights into coral range expansions by reconstructing the composition of a Late Holocene-aged subfossil coral death assemblage in an unusual location in Southeast Florida and comparing it to modern reefs throughout the region. Findings offer a unique glimpse into what was once a vibrant coral reef assemblage and discover if history can repeat itself in the face of climate change.
Published North American cities may see a major species turnover by the end of the century



Climate change may dramatically affect the animal species observed in North American cities, according to a new study.
Published Sweet success: Sugarcane's complex genetic code cracked



Scientists created a highly accurate reference genome for one of the most important modern crops and found a rare example of how genes confer disease resistance in plants. Exploring sugarcane's genetic code could help researchers develop more resilient and productive crops, with implications for both sugar production and biofuels.
Published Scientists extract genetic secrets from 4,000-year-old teeth to illuminate the impact of changing human diets over the centuries



Researchers have recovered remarkably preserved microbiomes from two teeth dating back 4,000 years, found in an Irish limestone cave. Genetic analyses of these microbiomes reveal major changes in the oral microenvironment from the Bronze Age to today. The teeth both belonged to the same male individual and also provided a snapshot of his oral health.
Published Scientists warn: The grey seal hunt is too large



Researchers warn that today's hunting quotas of about 3,000 animals pose a risk to the long-term survival of the grey seal in the Baltic Sea. The conclusions of this new study are based on statistics from 20th century seal hunting and predictions of future climate change.
Published New technique for predicting protein dynamics may prove big breakthrough for drug discovery



Understanding the structure of proteins is critical for demystifying their functions and developing drugs that target them. To that end, a team of researchers has developed a way of using machine learning to rapidly predict multiple protein configurations to advance understanding of protein dynamics and functions.
Published Looking to the past to prevent future extinction



Anthropologists created a computational model to predict the likelihood of animal extinctions based on the complex interaction of hunting and environmental change.
Published Biologists uncover new species of tiger beetle: Eunota houstoniana



Evolutionary biologists have unearthed a new species of tiger beetle, deemed Eunota houstoniana, honoring the Houston region where it predominantly resides.
Published Severe hurricanes boost influx of juveniles and gene flow in a coral reef sponge



A study is the first to evaluate substrate recolonization by sponges in the U.S. Virgin Islands after two catastrophic storms using genetic analyses to understand how much clonality verses sexual recruitment occurs on coral reefs post-storms. Results show that populations of clonal marine species with low pelagic dispersion, such as A. cauliformis, may benefit from increased frequency and magnitude of hurricanes to maintain genetic diversity and combat inbreeding, enhancing the resilience of Caribbean sponge communities to extreme storm events.
Published Discovery of amino acid unveils how light makes plants open



Scientists have uncovered a unique mechanism that regulates the opening of stomata in plants. Phosphorylation of the amino acid Thr881 on the plasma membrane proton pump plays a key role in this process. The study paves the way for the targeted manipulation of plant physiology, with potential applications in agriculture and environmental sustainability.
Published 'Winners and losers' as global warming forces plants uphill



Some plant species will 'win' and others will 'lose' as global warming forces them to move uphill, new research shows.