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Categories: Biology: Molecular, Computer Science: General
Published Genome recording makes living cells their own historians



Genomes can now be used to store information about a variety of transient biological events inside of living cells, as they happen, like a flight recorder collecting data from an aircraft. The method, called ENGRAM, aims to turn cells into their own historians. ENGRAM couples each kind of biological signal or event inside a cell to a symbolic barcode. This new strategy traces and archives the type and timing of biological signals inside the cell by inserting this information into the genome. For example, this record-keeping can track the commands that turn genes on or off.
Published Influenza viruses can use two ways to infect cells



Most influenza viruses enter human or animal cells through specific pathways on the cells' surface. Researchers have now discovered that certain human flu viruses and avian flu viruses can also use a second entry pathway, a protein complex of the immune system, to infect cells. This ability helps the viruses infect different species -- and potentially jump between animals and humans.
Published A new addition to the CRISPR toolbox: Teaching the gene scissors to detect RNA



CRISPR-Cas systems, defense systems in bacteria, have become a plentiful source of technologies for molecular diagnostics. Researchers have now expanded this extensive toolbox further. Their novel method, called PUMA, enables the detection of RNA with Cas12 nucleases, which naturally target DNA. PUMA promises a wide range of applications and high accuracy.
Published Unique characteristics of previously unexplored protein discovered



Research achieves scientific breakthrough in understanding cell division.
Published Immune system in the spotlight



Our immune system is always on alert, detecting and eliminating pathogens and cancer cells. Cellular control mechanisms cause diseased cells to present antigens on their surface like signs for the immune system. For analysis of the necessary complex antigen processing and transport processes in real time, researchers have developed a 'cage' that is opened with light to release trapped antigens at a specific place and time.
Published A new neural network makes decisions like a human would



Researchers are training neural networks to make decisions more like humans would. This science of human decision-making is only just being applied to machine learning, but developing a neural network even closer to the actual human brain may make it more reliable, according to the researchers.
Published When to trust an AI model



A new technique enables huge machine-learning models to efficiently generate more accurate quantifications of their uncertainty about certain predictions. This could help practitioners determine whether to trust the model when it is deployed in real-world settings.
Published New ways to study spinal cord malformations in embryos



Scientists have successfully created mechanical force sensors directly in the developing brains and spinal cords of chicken embryos, which they hope will improve understanding and prevention of birth malformations such as spina bifida.
Published A better way to make RNA drugs



RNA drugs are the next frontier of medicine, but manufacturing them requires an expensive and labor-intensive process that limits production and produces metric tons of toxic chemical waste. Researchers report a new, enzyme-based RNA synthesis method that can produce strands of RNA with both natural and modified nucleotides without the environmental hazards.
Published Neural networks made of light



Scientists propose a new way of implementing a neural network with an optical system which could make machine learning more sustainable in the future. In a new paper, the researchers have demonstrated a method much simpler than previous approaches.
Published Muscle machine: How water controls the speed of muscle contraction



The flow of water within a muscle fiber may dictate how quickly muscle can contract, according to a new study.
Published Nanoplastics and 'forever chemicals' disrupt molecular structures, functionality



Researchers have made significant inroads in understanding how nanoplastics and per- and polyfluoroalkyl substances (PFAS) -- commonly known as forever chemicals -- disrupt biomolecular structure and function. The work shows that the compounds can alter proteins found in human breast milk and infant formulas -- potentially causing developmental issues downstream.
Published How risk-averse are humans when interacting with robots?



How do people like to interact with robots when navigating a crowded environment? And what algorithms should roboticists use to program robots to interact with humans? These are the questions that a team of mechanical engineers and computer scientists sought to answer in a recent study.
Published Opening the right doors: 'Jumping gene' control mechanisms revealed



International joint research led by Akihisa Osakabe and Yoshimasa Takizawa of the University of Tokyo has clarified the molecular mechanisms in thale cresses (Arabidopsis thaliana) by which the DDM1 (Decreased in DNA Methylation 1) protein prevents the transcription of 'jumping genes.' DDM1 makes 'jumping genes' more accessible for transcription-suppressing chemical marks to be deposited. Because a variant of this protein exists in humans, the discovery provides insight into genetic conditions caused by such 'jumping gene' mutations.
Published First ever 3D reconstruction of 52,000-year-old woolly mammoth chromosomes thanks to serendipitously freeze-dried skin



An international research team has assembled the genome and 3D chromosomal structures of a 52,000-year-old woolly mammoth -- the first time such a feat has been achieved for any ancient DNA sample. The fossilized chromosomes, which are around a million times longer than most ancient DNA fragments, provide insight into how the mammoth's genome was organized within its living cells and which genes were active within the skin tissue from which the DNA was extracted. This unprecedented level of structural detail was retained because the mammoth underwent freeze-drying shortly after it died, which meant that its DNA was preserved in a glass-like state.
Published Atlas of proteins reveals inner workings of cells



Researchers discover how proteins behave inside cells using AI, which has the potential to guide drug design.
Published Big gain in battle against harmful bacteria



An unexpected find has enabled important progress to be made in the battle against harmful bacteria.
Published Researchers introduce generative AI for databases



Researchers have developed an easy-to-use tool that enables someone to perform complicated statistical analyses on tabular data using just a few keystrokes. Their method combines probabilistic AI models with the programming language SQL to provide faster and more accurate results than other methods.
Published New one-step method to make multiple edits to a cell's genome



A team of scientists have developed a new method that enables them to make precise edits in multiple locations within a cell -- all at once. Using molecules called retrons, they created a tool that can efficiently modify DNA in bacteria, yeast, and human cells.
Published Detecting defects in tomorrow's technology



New research offers an enhanced understanding of common defects in transition-metal dichalcogenides (TMDs) -- a potential replacement for silicon in computer chips -- and lays the foundation for etching smaller features.